Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467 mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241337 to 243142 8468 mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243748 to 246867 8469 mRNA_102: 8470 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 247531 to 248783 8470 mRNA_103: 8471 - Hypothetical Protein, at 248905 to 249863 8471
Group Condition mRNA_99 mRNA_100 mRNA_101 mRNA_102 mRNA_103
8467
8468
8469
8470
8471
growth on ricinoleic acid YNB Ricinoleic Acid -0.2     -0.5 -0.5
auxotrophy Dropout Complete -0.0     -0.4 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.1     -0.8 0.4
facs on lipid accumulation Sorted Low BODIPY Gate 0.3     -0.4 -0.3
growth on ricinoleic acid YNB Glucose 0.1     -0.3 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1     -0.5 0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1     -0.4 0.2
auxotrophy YNB Glucose 75mM Arginine 0.0     -0.1 -0.2
auxotrophy YNB Glucose 75mM Methionine 0.0     0.0 -0.3
auxotrophy YNB Glucose 0.2     -0.1 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0     0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy 0.0     -0.1 0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1     -0.1 0.3
facs on lipid accumulation Sorted No BODIPY Gate 0.2     -0.0 0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1     -0.3 0.6
ypd buoyancy 40 hrs High Buoyancy -0.0     -0.2 0.5
growth on ypd YPD -0.2     0.5 0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1     -0.2 0.8
growth on oleic acid YNB Glucose -0.3     0.7 0.0
growth on oleic acid YNB Oleic Acid -0.0     0.6 -0.0
facs on lipid accumulation Sorted High BODIPY Gate 0.2     -0.1 0.7
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