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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229785 to 233167
8465
mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659
8466
mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654
8467
mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241337 to 243142
8468
mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243748 to 246867
8469
Group
Condition
mRNA_97
mRNA_98
mRNA_99
mRNA_100
mRNA_101
8465
8466
8467
8468
8469
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.3
0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.3
0.0
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
0.1
0.0
auxotrophy
Dropout Complete
-0.0
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
0.2
growth on oleic acid
YNB Oleic Acid
0.1
0.0
-0.0
auxotrophy
YNB Glucose
-0.2
0.1
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.0
0.3
-0.1
growth on ypd
YPD
-0.0
0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
0.3
0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
0.3
0.2
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