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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Number of genes on each side:
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013
8403
mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147
8404
mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083
8405
mRNA_38: 8406 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 93493 to 94436
8406
mRNA_39: 8407 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SUPERFAMILY--SSF54695, at 94865 to 95759
8407
Group
Condition
mRNA_35
mRNA_36
mRNA_37
mRNA_38
mRNA_39
8403
8404
8405
8406
8407
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.0
-0.3
-0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
-0.4
0.1
0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.0
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.2
0.1
0.2
-0.3
0.2
ypd buoyancy
40 hrs High Buoyancy
0.1
-0.0
0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
0.3
-0.1
-0.1
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
0.2
-0.2
0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
0.2
0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
0.2
0.1
0.2
-0.1
auxotrophy
Dropout Complete
-0.0
0.3
0.2
0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.3
0.5
-0.4
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.3
0.0
0.2
0.1
0.1
auxotrophy
YNB Glucose 75mM Methionine
0.0
0.1
0.4
0.2
-0.0
growth on ypd
YPD
0.2
0.5
0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.3
0.3
0.1
0.1
auxotrophy
YNB Glucose
0.2
0.3
0.3
0.0
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.2
0.6
0.3
0.2
growth on oleic acid
YNB Oleic Acid
0.2
0.1
0.4
0.1
0.4
growth on oleic acid
YNB Glucose
-0.0
0.2
0.6
0.3
0.3
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