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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_8223: 16591 - K00801 FDFT1 farnesyl-diphosphate farnesyltransferase, at 707140 to 708844
16591
mRNA_8224: 16592 - K00948 PRPS, prsA ribose-phosphate pyrophosphokinase, at 709564 to 711429
16592
mRNA_8225: 16593 - HMMPfam-DSBA-like thioredoxin domain-PF01323,SUPERFAMILY--SSF52833, at 711695 to 712857
16593
mRNA_8226: 16594 - KOG0849 Transcription factor PRD and related proteins, contain PAX and HOX domains, at 713959 to 715025
16594
mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715339 to 716197
16595
Group
Condition
mRNA_8223
mRNA_8224
mRNA_8225
mRNA_8226
mRNA_8227
16591
16592
16593
16594
16595
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-2.7
0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.6
-0.2
auxotrophy
YNB Glucose
0.2
-0.6
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.5
0.1
-0.1
auxotrophy
Dropout Complete
0.2
-0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
0.2
0.0
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
0.4
-0.0
growth on oleic acid
YNB Glucose
0.2
-0.1
0.0
growth on ypd
YPD
0.3
-0.1
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
0.4
0.1
growth on oleic acid
YNB Oleic Acid
-0.1
0.7
0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.5
-0.0
0.1
growth on ricinoleic acid
YNB Glucose
0.3
0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
0.6
0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
0.9
1.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.5
1.5
-0.2
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