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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537692 to 539063
16521
mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895
16522
mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541110 to 545271
16523
mRNA_8156: 16524 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 545872 to 548769
16524
mRNA_8157: 16525 - ProSiteProfiles-DOMON domain profile.-PS50836,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665,SUPERFAMILY--SSF49344, at 549657 to 551853
16525
Group
Condition
mRNA_8153
mRNA_8154
mRNA_8155
mRNA_8156
mRNA_8157
16521
16522
16523
16524
16525
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.1
-0.6
-1.3
-0.2
auxotrophy
YNB Glucose
-0.1
0.1
-0.9
-1.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
0.0
-0.8
-0.9
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
0.1
-0.7
-0.7
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.0
-0.2
1.5
-2.2
-0.5
auxotrophy
Dropout Complete
0.1
-0.1
-0.4
-0.8
-0.0
auxotrophy
YNB Glucose 75mM Methionine
0.1
0.1
-0.5
-1.0
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
0.0
-0.5
-0.4
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
-0.4
0.1
0.1
growth on oleic acid
YNB Glucose
0.1
0.3
-0.4
-0.7
0.0
growth on oleic acid
YNB Oleic Acid
0.1
0.1
-0.6
-0.3
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
0.1
0.3
-1.1
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
-0.2
0.4
-0.7
0.1
growth on ypd
YPD
0.2
0.0
-0.5
0.0
0.1
ypd buoyancy
40 hrs High Buoyancy
0.3
0.1
0.1
-0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
-0.3
0.5
-0.3
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.1
0.1
0.1
0.0
ypd buoyancy
40 hrs Low Buoyancy
0.0
0.1
0.0
0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
0.3
0.4
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
0.1
0.2
0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
-0.1
0.6
1.8
0.2
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