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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230764 to 233185
16391
mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233351 to 234544
16392
mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261
16393
mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561
16394
mRNA_8027: 16395 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 243826 to 244717
16395
Group
Condition
mRNA_8023
mRNA_8024
mRNA_8025
mRNA_8026
mRNA_8027
16391
16392
16393
16394
16395
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.3
-0.4
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.5
-0.0
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
-0.5
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.6
0.0
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.2
0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.3
0.0
-0.0
growth on oleic acid
YNB Glucose
-0.1
-0.3
0.0
-0.2
growth on ypd
YPD
0.0
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
0.2
-0.2
auxotrophy
YNB Glucose
-0.2
-0.1
0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.3
-0.4
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.4
0.3
0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
0.3
0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
0.2
0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.0
0.1
0.0
growth on ricinoleic acid
YNB Glucose
-0.1
0.1
0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.1
0.2
-0.1
growth on oleic acid
YNB Oleic Acid
0.1
0.0
0.0
-0.0
auxotrophy
Dropout Complete
-0.0
-0.1
0.4
-0.0
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