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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62103 to 65141
16310
mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135
16311
mRNA_7944: 16312 - Hypothetical Protein, at 69518 to 70390
16312
mRNA_7945: 16313 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 70630 to 71509
16313
mRNA_7946: 16314 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 71933 to 72812
16314
Group
Condition
mRNA_7942
mRNA_7943
mRNA_7944
mRNA_7945
mRNA_7946
16310
16311
16312
16313
16314
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.7
-0.4
-1.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.0
0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
0.1
0.0
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.2
0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
0.2
0.3
-0.1
0.0
facs on lipid accumulation
Sorted No BODIPY Gate
0.0
-0.4
0.2
-0.2
0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
0.1
0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
0.2
-0.1
-0.1
0.1
auxotrophy
YNB Glucose 75mM Arginine
0.3
-0.5
0.2
0.2
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
0.2
0.8
-0.3
0.3
auxotrophy
YNB Glucose
0.1
-0.3
0.3
0.2
0.1
growth on ricinoleic acid
YNB Glucose
0.1
0.1
0.1
0.3
-0.3
growth on ypd
YPD
-0.5
0.0
0.2
0.4
0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
0.0
0.7
0.0
0.0
auxotrophy
YNB Glucose 75mM Methionine
0.2
-0.2
0.1
0.4
0.1
auxotrophy
Dropout Complete
0.2
-0.4
0.5
0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
-0.1
0.2
-0.1
0.5
growth on oleic acid
YNB Oleic Acid
-0.0
0.2
0.3
0.2
0.1
growth on oleic acid
YNB Glucose
0.2
0.1
0.2
0.3
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.2
0.2
0.5
0.3
0.1
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