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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874959 to 876595
16068
mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877198 to 880311
16069
mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880758 to 882745
16070
mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883081 to 887724
16071
mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888011 to 890440
16072
Group
Condition
mRNA_7700
mRNA_7701
mRNA_7702
mRNA_7703
mRNA_7704
16068
16069
16070
16071
16072
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.2
-0.2
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
-0.2
0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
0.4
0.1
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
0.1
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
0.6
-0.4
-0.5
0.0
auxotrophy
YNB Glucose 75mM Arginine
0.2
0.2
-0.4
-0.2
auxotrophy
YNB Glucose
0.3
0.0
-0.3
-0.2
auxotrophy
Dropout Complete
0.1
0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.3
-0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
0.2
0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.4
0.2
-0.2
-0.2
growth on ypd
YPD
-0.2
-0.0
0.5
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.1
-0.1
0.2
growth on oleic acid
YNB Glucose
0.4
0.0
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
0.5
-0.2
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.4
-0.0
0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.2
0.1
0.2
growth on oleic acid
YNB Oleic Acid
0.5
0.1
0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
0.3
0.2
0.3
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