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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187404 to 189530
15768
mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190009 to 193201
15769
mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193334 to 195902
15770
mRNA_7403: 15771 - Hypothetical Protein, at 196624 to 197387
15771
mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197596 to 198665
15772
Group
Condition
mRNA_7400
mRNA_7401
mRNA_7402
mRNA_7403
mRNA_7404
15768
15769
15770
15771
15772
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.7
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.8
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.8
0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.6
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
0.2
0.0
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
0.1
0.1
-0.5
auxotrophy
Dropout Complete
-0.1
-0.0
0.0
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
0.5
0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
0.0
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose
0.1
0.1
-0.3
-0.0
growth on ypd
YPD
-0.0
-0.3
-0.1
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
0.1
-0.1
0.5
ypd buoyancy
40 hrs No Buoyancy Separation
0.2
0.1
-0.4
0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
0.2
-0.1
0.3
ypd buoyancy
40 hrs Median Buoyancy
0.2
0.1
-0.1
0.0
growth on oleic acid
YNB Glucose
0.2
0.1
0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.4
0.3
-0.2
0.0
growth on oleic acid
YNB Oleic Acid
0.2
0.4
-0.1
0.2
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