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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7396: 15764 - K18584 ACTR3, ARP3 actin-related protein 3, at 179186 to 180946
15764
mRNA_7397: 15765 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 181138 to 183665
15765
mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184149 to 185888
15766
mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186172 to 187240
15767
mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187404 to 189530
15768
Group
Condition
mRNA_7396
mRNA_7397
mRNA_7398
mRNA_7399
mRNA_7400
15764
15765
15766
15767
15768
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.7
0.1
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
-0.0
-0.2
0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.6
0.0
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.1
0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
0.7
-0.4
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
0.5
-0.2
-0.3
-0.2
auxotrophy
Dropout Complete
0.3
-0.2
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
0.1
0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.2
0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
0.2
0.1
0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
-0.1
0.2
-0.0
growth on oleic acid
YNB Oleic Acid
0.3
-0.2
-0.2
0.2
auxotrophy
YNB Glucose
0.4
-0.1
-0.0
0.1
auxotrophy
YNB Glucose 75mM Arginine
0.1
-0.1
-0.0
0.4
growth on oleic acid
YNB Glucose
0.4
-0.2
-0.0
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
1.1
-0.3
0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
0.9
0.0
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
0.9
-0.1
0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
0.7
-0.0
-0.2
0.0
growth on ypd
YPD
1.4
0.2
-0.1
-0.0
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