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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7165: 15533 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 1031482 to 1033004
15533
mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1033157 to 1035237
15534
mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1035415 to 1036383
15535
mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1036576 to 1038409
15536
mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1038666 to 1040206
15537
Group
Condition
mRNA_7165
mRNA_7166
mRNA_7167
mRNA_7168
mRNA_7169
15533
15534
15535
15536
15537
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.7
0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.2
0.1
-0.2
-1.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
0.1
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.1
0.1
-0.0
-1.6
ypd buoyancy
40 hrs No Buoyancy Separation
0.2
-0.2
-0.1
-1.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.0
-0.1
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.5
0.1
0.5
growth on ypd
YPD
-0.1
0.1
0.1
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
-0.2
-0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
0.3
-0.2
-0.1
-0.6
growth on oleic acid
YNB Glucose
0.0
-0.3
-0.1
0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
0.2
0.8
ypd buoyancy
40 hrs Median Buoyancy
0.4
0.1
-0.0
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.0
-0.0
0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
0.2
0.4
-0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
0.0
-0.1
1.2
auxotrophy
Dropout Complete
-0.1
0.0
-0.1
1.3
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.0
-0.2
1.2
auxotrophy
YNB Glucose
0.2
0.1
0.0
1.0
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