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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7156: 15524 - K20102 YTHDF YTH domain-containing family protein, at 1010794 to 1011457
15524
mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1012325 to 1013982
15525
mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1014163 to 1016901
15526
mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1017040 to 1019381
15527
mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1019624 to 1022322
15528
Group
Condition
mRNA_7156
mRNA_7157
mRNA_7158
mRNA_7159
mRNA_7160
15524
15525
15526
15527
15528
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
0.3
-1.7
-0.4
0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
0.2
-0.5
-0.2
-0.8
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.8
-0.5
-0.0
0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.4
-0.8
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.1
-0.7
-0.4
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.0
-0.3
-0.5
-0.1
-0.3
auxotrophy
YNB Glucose
0.4
-0.6
-0.7
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
1.0
-0.8
-0.2
-0.8
-0.3
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.5
-0.3
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.6
-0.3
-0.1
0.1
growth on ricinoleic acid
YNB Glucose
0.9
-0.5
-0.5
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.5
0.1
0.2
-0.0
auxotrophy
Dropout Complete
0.4
-0.6
-0.4
-0.1
-0.1
growth on oleic acid
YNB Glucose
0.1
-0.6
0.1
-0.5
0.3
growth on ypd
YPD
0.1
0.1
-0.6
0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
-0.0
0.2
0.0
growth on oleic acid
YNB Oleic Acid
0.4
-0.2
0.5
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
1.0
0.0
-0.4
-0.2
0.0
ypd buoyancy
40 hrs Median Buoyancy
0.4
0.1
0.2
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.3
0.2
-0.1
0.0
ypd buoyancy
40 hrs High Buoyancy
0.3
0.2
0.3
0.2
0.0
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