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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806497 to 812015
15437
mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812673 to 814209
15438
mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814580 to 815327
15439
mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476
15440
mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819072 to 820252
15441
Group
Condition
mRNA_7069
mRNA_7070
mRNA_7071
mRNA_7072
mRNA_7073
15437
15438
15439
15440
15441
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
0.6
0.9
-0.6
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
0.3
0.4
-0.4
-0.5
-0.1
auxotrophy
Dropout Complete
-0.0
0.4
0.3
0.1
-0.9
auxotrophy
YNB Glucose
0.1
0.2
0.3
0.0
-0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.1
0.1
0.4
-0.4
-0.1
growth on ypd
YPD
-0.1
-0.2
-0.0
0.5
0.0
growth on oleic acid
YNB Glucose
-0.0
-0.1
0.6
0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
0.1
0.3
-0.4
0.3
ypd buoyancy
40 hrs Low Buoyancy
0.0
0.2
0.8
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.0
0.8
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.2
0.5
0.0
0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.3
0.2
0.0
0.3
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.2
0.1
0.2
0.2
ypd buoyancy
40 hrs High Buoyancy
0.1
0.2
0.5
-0.2
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
0.1
1.1
-0.4
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.2
0.4
0.1
0.6
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
1.5
0.4
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
0.2
1.1
0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
0.2
0.2
0.5
0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
2.3
0.8
0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.1
2.2
0.7
0.9
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