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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611825 to 615054
15357
mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615563 to 617347
15358
mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077
15359
mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573
15360
mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622654 to 624401
15361
Group
Condition
mRNA_6989
mRNA_6990
mRNA_6991
mRNA_6992
mRNA_6993
15357
15358
15359
15360
15361
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.8
-1.2
0.4
0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-3.2
0.2
-0.6
-0.3
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-2.4
-0.1
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.5
-0.3
-0.6
-0.1
0.2
ypd buoyancy
40 hrs Low Buoyancy
-1.9
-0.5
0.2
0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.2
-0.7
-0.0
-0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
0.8
-0.1
-0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
0.1
-0.0
0.0
-0.5
growth on oleic acid
YNB Oleic Acid
-0.6
0.2
-0.3
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
-0.2
0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.8
0.2
0.3
0.0
-0.2
auxotrophy
Dropout Complete
-0.2
0.7
-0.0
0.1
-0.8
growth on ypd
YPD
-0.3
0.1
0.0
0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.3
0.1
0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.0
0.3
0.4
0.1
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
1.0
-0.5
0.1
0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.6
-0.2
0.1
0.1
0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.6
0.1
0.2
0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.5
0.6
0.4
-0.6
auxotrophy
YNB Glucose
-0.1
0.6
0.7
0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
1.9
0.8
0.1
-0.2
-0.5
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