Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611825 to 615054 15357 mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615563 to 617347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620430 to 622573 15360 mRNA_6993: 15361 - HMMPfam-Protein of unknown function (DUF455)-PF04305,ProSiteProfiles-Rieske [2Fe-2S] iron-sulfur domain profile.-PS51296,SUPERFAMILY--SSF47240,SUPERFAMILY--SSF50022, at 622654 to 624401 15361
Group Condition mRNA_6989 mRNA_6990 mRNA_6991 mRNA_6992 mRNA_6993
15357
15358
15359
15360
15361
buoyancy on lipid accumulation 40 hrs Low Buoyancy -2.8 -1.2 0.4 0.0 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -3.2 0.2 -0.6 -0.3 0.2
facs on lipid accumulation Sorted No BODIPY Gate -2.4 -0.1 -0.3 -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -2.5 -0.3 -0.6 -0.1 0.2
ypd buoyancy 40 hrs Low Buoyancy -1.9 -0.5 0.2 0.1 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.2 -0.7 -0.0 -0.2 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -1.2 0.8 -0.1 -0.3 -0.6
growth on ricinoleic acid YNB Methylricinoleic Acid -1.1 0.1 -0.0 0.0 -0.5
growth on oleic acid YNB Oleic Acid -0.6 0.2 -0.3 -0.1 -0.5
growth on oleic acid YNB Glucose -0.2 -0.2 0.1 -0.3 -0.1
growth on ricinoleic acid YNB Glucose -0.8 0.2 0.3 0.0 -0.2
auxotrophy Dropout Complete -0.2 0.7 -0.0 0.1 -0.8
growth on ypd YPD -0.3 0.1 0.0 0.2 -0.3
ypd buoyancy 40 hrs Median Buoyancy 0.1 -0.3 0.1 0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.0 0.3 0.4 0.1 -0.8
ypd buoyancy 40 hrs No Buoyancy Separation 1.0 -0.5 0.1 0.1 -0.1
ypd buoyancy 40 hrs High Buoyancy 0.6 -0.2 0.1 0.1 0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.6 0.1 0.2 0.1 -0.4
auxotrophy YNB Glucose 75mM Arginine 0.1 0.5 0.6 0.4 -0.6
auxotrophy YNB Glucose -0.1 0.6 0.7 0.2 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy 1.9 0.8 0.1 -0.2 -0.5
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