Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315464 to 319765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325677 to 326693 15240 mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326924 to 328423 15241 mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328504 to 329604 15242
Group Condition mRNA_6870 mRNA_6871 mRNA_6872 mRNA_6873 mRNA_6874
15238
15239
15240
15241
15242
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.5 -1.7 -0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -1.0 0.4 0.0 0.0
ypd buoyancy 40 hrs High Buoyancy 0.0 -0.4 -0.5 0.2 0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 -0.1 -0.7 -0.1 0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.2 0.0 0.1 0.1
facs on lipid accumulation Sorted High BODIPY Gate 0.3 -0.1 0.3 -0.3 -0.2
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.0 -0.3 0.0 0.2
facs on lipid accumulation Sorted No BODIPY Gate 0.2 -0.2 -0.0 0.1 0.1
growth on ricinoleic acid YNB Glucose 0.0 0.2 -0.3 0.0 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 0.1 0.5 0.1 -0.2
auxotrophy YNB Glucose 75mM Methionine 0.1 0.2 -0.1 0.4 0.4
ypd buoyancy 40 hrs Low Buoyancy 0.1 0.1 0.2 0.2 0.3
growth on ypd YPD 0.1 0.2 0.1 1.0 -0.3
auxotrophy Dropout Complete 0.2 0.5 -0.2 0.4 0.1
growth on oleic acid YNB Oleic Acid 0.2 0.6 -0.2 0.3 0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1 0.0 1.0 -0.0 0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 0.4 -0.2 0.5 0.4
growth on oleic acid YNB Glucose 0.0 0.2 0.7 0.1 0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.0 0.5 0.8 0.2 0.1
auxotrophy YNB Glucose 0.3 0.3 0.2 0.4 0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.3 0.4 1.4 0.4 -0.7
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