Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1375555 to 1377901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1379343 to 1382272 15030 mRNA_6663: 15031 - Hypothetical Protein, at 1382729 to 1383844 15031 mRNA_6664: 15032 - K03165 TOP3 DNA topoisomerase III, at 1384031 to 1388134 15032 mRNA_6665: 15033 - K01952 purL, PFAS phosphoribosylformylglycinamidine synthase, at 1389385 to 1393556 15033
Group Condition mRNA_6661 mRNA_6662 mRNA_6663 mRNA_6664 mRNA_6665
15029
15030
15031
15032
15033
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -2.3 0.1 -0.2 0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 -1.7 -0.3 -0.2 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -1.3 0.1 -0.3 -0.5
facs on lipid accumulation Sorted No BODIPY Gate 0.0 -0.7 -0.4 0.2 -1.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.2 -0.5 -0.2 -0.3 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.2 -0.2 -0.2 -0.5
growth on ricinoleic acid YNB Glucose 0.1 -0.7 0.1 -1.0 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.2 0.3 -0.5 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.5 -0.0 0.2 -0.2
auxotrophy YNB Glucose 0.4 -0.3 0.0 -1.1 0.3
facs on lipid accumulation Sorted High BODIPY Gate 0.2 -1.3 -0.4 1.0 0.2
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.5 -0.1 -0.3 0.6
growth on ypd YPD -0.1 -0.2 0.4 -0.5 0.3
growth on oleic acid YNB Oleic Acid -0.0 0.3 0.1 0.2 -0.5
growth on oleic acid YNB Glucose -0.0 0.1 0.3 -0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation 0.2 0.2 0.0 -0.1 0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 -0.5 0.2 0.2 0.5
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.5 0.3 0.9 0.0
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.3 0.4 0.0 0.8
auxotrophy Dropout Complete 0.3 -0.3 0.3 -0.2 0.8
ypd buoyancy 40 hrs Low Buoyancy 0.0 0.5 0.6 0.8 0.3
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