Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1366899 to 1370407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1370693 to 1373174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1373866 to 1375485 15028 mRNA_6661: 15029 - K11699 RDR, RDRP RNA-dependent RNA polymerase, at 1375555 to 1377901 15029 mRNA_6662: 15030 - HMMPfam-G-patch domain-PF01585,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-G-patch domain profile.-PS50174,SMART-RNA recognition motif-SM00360,SMART-glycine rich nucleic binding domain-SM00443,SUPERFAMILY--SSF54928, at 1379343 to 1382272 15030
Group Condition mRNA_6658 mRNA_6659 mRNA_6660 mRNA_6661 mRNA_6662
15026
15027
15028
15029
15030
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3   -0.1 -0.1 -2.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6   -0.2 0.0 -1.7
facs on lipid accumulation Sorted Low BODIPY Gate -0.8   -0.1 -0.1 -0.5
growth on ricinoleic acid YNB Ricinoleic Acid 0.2   -0.2 -0.1 -1.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2   0.0 0.2 -1.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.5   -0.1 -0.4 -0.2
growth on ypd YPD -0.1   -0.6 -0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.1   -0.2 0.1 -0.7
ypd buoyancy 40 hrs Median Buoyancy -0.3   0.1 -0.0 -0.5
ypd buoyancy 40 hrs No Buoyancy Separation -0.4   -0.6 0.2 0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1   -0.1 0.2 -0.5
ypd buoyancy 40 hrs High Buoyancy -0.2   0.1 -0.1 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid 0.0   0.0 -0.1 -0.2
auxotrophy YNB Glucose 75mM Arginine 0.2   -0.2 0.2 -0.5
auxotrophy YNB Glucose 75mM Methionine 0.4   -0.1 0.1 -0.5
facs on lipid accumulation Sorted No BODIPY Gate 0.1   0.6 0.0 -0.7
growth on oleic acid YNB Glucose 0.3   -0.2 -0.0 0.1
auxotrophy YNB Glucose 0.3   -0.0 0.4 -0.3
growth on oleic acid YNB Oleic Acid 0.2   -0.1 -0.0 0.3
auxotrophy Dropout Complete 0.3   0.2 0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy 0.1   -0.0 0.0 0.5
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