Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1123067 to 1127630 14938 mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1128601 to 1130974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1131312 to 1136542 14940 mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1136818 to 1137633 14941 mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1137954 to 1139326 14942
Group Condition mRNA_6570 mRNA_6571 mRNA_6572 mRNA_6573 mRNA_6574
14938
14939
14940
14941
14942
auxotrophy YNB Glucose 0.0 -0.9 0.0   -0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.7 -0.1   -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.7 0.0   -0.4
auxotrophy YNB Glucose 75mM Arginine 0.1 -0.9 0.1   -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 -0.4 -0.1   -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.6 -0.2 -0.0   -0.2
growth on oleic acid YNB Glucose -0.3 -0.5 -0.0   -0.1
auxotrophy YNB Glucose 75mM Methionine 0.2 -0.8 0.3   -0.5
growth on oleic acid YNB Oleic Acid -0.0 -1.0 0.1   0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 -0.5 -0.1   -0.1
growth on ricinoleic acid YNB Glucose -0.1 -0.2 -0.2   -0.2
auxotrophy Dropout Complete 0.4 -0.7 0.3   -0.6
growth on ricinoleic acid YNB Ricinoleic Acid 0.1 -0.5 -0.1   -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.2 0.2   -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 -0.3 0.1   -0.3
growth on ypd YPD 0.2 -0.5 -0.3   0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 0.1 0.2   0.0
ypd buoyancy 40 hrs Low Buoyancy 0.2 -0.6 0.2   0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.1 0.3   0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 0.6 0.1   -0.3
ypd buoyancy 40 hrs Median Buoyancy 0.0 0.3 0.2   0.1
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