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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_6525: 14893 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1002265 to 1003923
14893
mRNA_6526: 14894 - KOG2929 Transcription factor, component of CCR4 transcriptional complex, at 1004889 to 1006380
14894
mRNA_6527: 14895 - K18178 COA5, PET191 cytochrome c oxidase assembly factor 5, at 1006595 to 1007064
14895
mRNA_6528: 14896 - K01514 PRUNE, PPX1 exopolyphosphatase, at 1007263 to 1008621
14896
mRNA_6529: 14897 - K03626 EGD2, NACA nascent polypeptide-associated complex subunit alpha, at 1008919 to 1009693
14897
Group
Condition
mRNA_6525
mRNA_6526
mRNA_6527
mRNA_6528
mRNA_6529
14893
14894
14895
14896
14897
facs on lipid accumulation
Sorted High BODIPY Gate
0.1
-1.9
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
-0.9
0.0
growth on ricinoleic acid
YNB Glucose
-0.8
-0.7
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-1.5
0.3
growth on oleic acid
YNB Glucose
-0.1
-1.4
0.1
growth on ypd
YPD
0.4
-1.2
0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
0.2
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
0.1
0.1
auxotrophy
Dropout Complete
0.3
-0.9
0.6
ypd buoyancy
40 hrs No Buoyancy Separation
0.1
-0.3
0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
1.2
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.1
0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
0.8
auxotrophy
YNB Glucose
-0.0
-0.2
0.5
auxotrophy
YNB Glucose 75mM Methionine
0.3
-0.6
0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
1.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
0.5
-0.6
0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
0.5
0.3
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