Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6279: 14647 - K13110 MFAP1 microfibrillar-associated protein 1, at 428487 to 430631 14647 mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431030 to 432502 14648 mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432804 to 433205 14649 mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433495 to 438419 14650 mRNA_6283: 14651 - HMMPfam-FHA domain-PF00498,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879, at 438750 to 440581 14651
Group Condition mRNA_6279 mRNA_6280 mRNA_6281 mRNA_6282 mRNA_6283
14647
14648
14649
14650
14651
buoyancy on lipid accumulation 40 hrs Median Buoyancy     -0.6 -0.1 -0.2
growth on oleic acid YNB Glucose     -0.7 -0.1 0.2
facs on lipid accumulation Sorted High BODIPY Gate     -0.1 -0.2 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy     -0.3 -0.1 0.0
facs on lipid accumulation Sorted No BODIPY Gate     -0.3 -0.2 0.2
growth on oleic acid YNB Oleic Acid     -0.4 0.2 0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy     -0.1 0.1 0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation     -0.3 0.1 0.2
growth on ypd YPD     -0.2 0.2 0.1
facs on lipid accumulation Sorted Low BODIPY Gate     -0.2 0.4 0.0
ypd buoyancy 40 hrs High Buoyancy     0.1 0.3 -0.2
ypd buoyancy 40 hrs Median Buoyancy     0.3 0.2 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation     0.5 0.3 -0.4
auxotrophy YNB Glucose     0.6 -0.0 -0.1
auxotrophy Dropout Complete     0.7 -0.3 0.2
auxotrophy YNB Glucose 75mM Arginine     0.8 -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid     0.6 0.1 0.1
growth on ricinoleic acid YNB Ricinoleic Acid     0.6 0.2 0.1
growth on ricinoleic acid YNB Glucose     0.5 0.2 0.2
ypd buoyancy 40 hrs Low Buoyancy     0.6 0.3 0.3
auxotrophy YNB Glucose 75mM Methionine     1.3 -0.1 -0.0
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