Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_6278: 14646 - K17080 PHB1 prohibitin 1, at 426858 to 428286 14646 mRNA_6279: 14647 - K13110 MFAP1 microfibrillar-associated protein 1, at 428487 to 430631 14647 mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431030 to 432502 14648 mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432804 to 433205 14649 mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433495 to 438419 14650
Group Condition mRNA_6278 mRNA_6279 mRNA_6280 mRNA_6281 mRNA_6282
14646
14647
14648
14649
14650
ypd buoyancy 40 hrs Low Buoyancy -2.7     0.6 0.3
facs on lipid accumulation Sorted High BODIPY Gate -1.2     -0.1 -0.2
growth on oleic acid YNB Glucose -0.4     -0.7 -0.1
growth on oleic acid YNB Oleic Acid -0.6     -0.4 0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -1.6     0.6 0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2     -0.3 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1     -0.3 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -1.0     0.6 0.2
auxotrophy Dropout Complete -0.5     0.7 -0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.6     -0.6 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0     -0.1 0.1
ypd buoyancy 40 hrs Median Buoyancy -0.5     0.3 0.2
ypd buoyancy 40 hrs High Buoyancy -0.2     0.1 0.3
growth on ricinoleic acid YNB Glucose -0.5     0.5 0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.5     -0.3 0.1
facs on lipid accumulation Sorted Low BODIPY Gate 0.2     -0.2 0.4
auxotrophy YNB Glucose 75mM Arginine -0.2     0.8 -0.1
growth on ypd YPD 1.0     -0.2 0.2
ypd buoyancy 40 hrs No Buoyancy Separation 0.5     0.5 0.3
auxotrophy YNB Glucose 0.9     0.6 -0.0
auxotrophy YNB Glucose 75mM Methionine 0.5     1.3 -0.1
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