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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368702 to 371060
14625
mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480
14626
mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098
14627
mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779
14628
mRNA_6261: 14629 - K09274 K09274 HMG box factor, other, at 383014 to 384624
14629
Group
Condition
mRNA_6257
mRNA_6258
mRNA_6259
mRNA_6260
mRNA_6261
14625
14626
14627
14628
14629
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.6
-1.9
0.1
-0.1
auxotrophy
YNB Glucose
-0.1
-0.2
-0.3
0.1
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.4
0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
0.0
-0.3
0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
0.3
-0.7
0.0
0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
0.2
-0.9
0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
0.1
-0.3
-0.3
0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.1
0.2
-0.2
growth on ypd
YPD
0.0
-0.0
-0.0
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
0.2
-0.2
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.5
-0.2
0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
0.1
-0.1
-0.1
0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
0.0
0.2
-0.4
0.2
0.0
ypd buoyancy
40 hrs Low Buoyancy
0.3
-0.1
-0.1
0.2
-0.3
growth on oleic acid
YNB Oleic Acid
0.1
-0.4
0.2
0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.8
-0.2
-0.0
-0.0
0.1
growth on ricinoleic acid
YNB Glucose
0.4
0.2
-0.4
0.2
0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.5
-0.0
-0.1
-0.2
0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.6
0.2
0.4
-0.3
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.4
0.3
-0.0
0.2
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.6
0.1
0.1
0.3
0.4
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