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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_6080: 14448 - KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans), at 1596741 to 1598901
14448
mRNA_6081: 14449 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1598988 to 1602551
14449
mRNA_6082: 14450 - K03010 RPB2, POLR2B DNA-directed RNA polymerase II subunit RPB2, at 1603316 to 1607774
14450
mRNA_6083: 14451 - Hypothetical Protein, at 1607969 to 1610179
14451
mRNA_6084: 14452 - SUPERFAMILY--SSF54427, at 1610344 to 1611077
14452
Group
Condition
mRNA_6080
mRNA_6081
mRNA_6082
mRNA_6083
mRNA_6084
14448
14449
14450
14451
14452
growth on ypd
YPD
-0.0
-0.5
-0.2
ypd buoyancy
40 hrs High Buoyancy
0.2
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.4
-0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.0
-0.0
0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.2
0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
0.3
-0.1
growth on ricinoleic acid
YNB Glucose
0.2
0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.3
0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.0
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
-0.0
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
0.1
0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
0.1
-0.0
0.4
auxotrophy
YNB Glucose 75mM Arginine
0.2
0.3
0.0
auxotrophy
YNB Glucose
0.0
0.4
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
0.1
0.3
growth on oleic acid
YNB Glucose
0.2
0.5
-0.0
auxotrophy
Dropout Complete
0.0
0.4
0.3
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.3
0.3
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