Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5890: 14258 - K01876 DARS, aspS aspartyl-tRNA synthetase, at 1177559 to 1180094 14258 mRNA_5891: 14259 - K11788 ADE5 phosphoribosylamine--glycine ligase / phosphoribosylformylglycinamidine cyclo-ligase, at 1182342 to 1185171 14259 mRNA_5892: 14260 - Hypothetical Protein, at 1185349 to 1185740 14260 mRNA_5893: 14261 - KOG1748 Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit, at 1185881 to 1186514 14261 mRNA_5894: 14262 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1186921 to 1189596 14262
Group Condition mRNA_5890 mRNA_5891 mRNA_5892 mRNA_5893 mRNA_5894
14258
14259
14260
14261
14262
buoyancy on lipid accumulation 40 hrs Low Buoyancy   -4.9 -0.1   -0.4
facs on lipid accumulation Sorted No BODIPY Gate   -4.7 -0.4   -0.3
auxotrophy YNB Glucose 75mM Arginine   -5.0 -0.1   -0.1
auxotrophy YNB Glucose   -4.4 -0.0   -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy   -4.5 -0.0   -0.2
growth on oleic acid YNB Glucose   -4.4 0.0   -0.1
facs on lipid accumulation Sorted Low BODIPY Gate   -3.6 -0.6   0.0
growth on ricinoleic acid YNB Glucose   -3.6 0.2   -0.2
growth on ricinoleic acid YNB Ricinoleic Acid   -3.9 0.7   -0.3
facs on lipid accumulation Sorted High BODIPY Gate   -2.9 -0.5   0.1
growth on ricinoleic acid YNB Methylricinoleic Acid   -3.5 0.3   -0.0
auxotrophy YNB Glucose 75mM Methionine   -2.9 -0.0   0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy   -3.0 0.1   0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation   -1.8 -0.3   -0.2
ypd buoyancy 40 hrs High Buoyancy   -2.0 -0.1   0.1
growth on oleic acid YNB Oleic Acid   -2.4 0.3   0.1
growth on ypd YPD   -1.0 -0.4   -0.2
ypd buoyancy 40 hrs Low Buoyancy   -1.3 -0.2   -0.1
ypd buoyancy 40 hrs Median Buoyancy   -0.7 -0.1   -0.1
auxotrophy Dropout Complete   0.5 -0.3   -0.1
ypd buoyancy 40 hrs No Buoyancy Separation   2.3 0.1   0.3
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