Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1123241 to 1124381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1124723 to 1126548 14237 mRNA_5870: 14238 - Hypothetical Protein, at 1126742 to 1127263 14238 mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1127844 to 1131373 14239 mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1131493 to 1135652 14240
Group Condition mRNA_5868 mRNA_5869 mRNA_5870 mRNA_5871 mRNA_5872
14236
14237
14238
14239
14240
growth on ricinoleic acid YNB Methylricinoleic Acid 0.0   -0.4 -0.0 -2.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.4   -0.1 -0.1 -2.4
growth on oleic acid YNB Glucose -0.6   0.2 -0.1 -0.2
growth on oleic acid YNB Oleic Acid -0.3   -0.2 -0.1 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.2   0.0 -0.2 -0.3
facs on lipid accumulation Sorted No BODIPY Gate 0.5   -0.3 -0.4 -0.4
auxotrophy Dropout Complete -0.2   0.0 0.0 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.3   0.1 -0.1 0.0
growth on ricinoleic acid YNB Glucose 0.1   0.0 0.1 -0.6
auxotrophy YNB Glucose 75mM Methionine -0.1   -0.3 0.1 0.3
auxotrophy YNB Glucose -0.1   -0.2 0.1 0.3
growth on ypd YPD 0.3   -0.1 0.3 -0.2
auxotrophy YNB Glucose 75mM Arginine 0.1   -0.1 0.1 0.3
ypd buoyancy 40 hrs Median Buoyancy -0.0   0.1 -0.1 0.4
ypd buoyancy 40 hrs High Buoyancy 0.2   0.1 -0.0 0.3
facs on lipid accumulation Sorted Low BODIPY Gate 0.7   0.1 -0.2 0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.0   0.6 0.3 0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.9   0.5 -0.1 0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.9   0.2 0.0 0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy 1.1   0.1 -0.0 0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy 1.2   0.8 0.4 -0.0
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