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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5737: 14105 - HMMPfam-Arsenite-resistance protein 2-PF04959,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 814354 to 815055
14105
mRNA_5738: 14106 - SUPERFAMILY--SSF54928, at 815382 to 817330
14106
mRNA_5739: 14107 - K05692 ACTB_G1 actin beta/gamma 1, at 818147 to 820488
14107
mRNA_5740: 14108 - K00121 frmA, ADH5, adhC S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase, at 820937 to 822719
14108
mRNA_5741: 14109 - K00121 frmA, ADH5, adhC S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase, at 823923 to 825708
14109
Group
Condition
mRNA_5737
mRNA_5738
mRNA_5739
mRNA_5740
mRNA_5741
14105
14106
14107
14108
14109
growth on oleic acid
YNB Oleic Acid
-1.7
-1.4
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.6
-1.5
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-2.1
-0.8
0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-1.7
0.2
auxotrophy
Dropout Complete
-0.9
-1.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-1.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.8
-0.9
-0.4
auxotrophy
YNB Glucose
-0.8
-0.8
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
-1.0
0.3
growth on oleic acid
YNB Glucose
-0.6
-0.9
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.2
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.6
0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
0.2
-0.7
growth on ricinoleic acid
YNB Glucose
-0.4
-0.5
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.1
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.7
0.2
0.3
growth on ypd
YPD
2.1
-1.0
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.8
0.5
0.3
ypd buoyancy
40 hrs No Buoyancy Separation
1.0
1.2
-0.3
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