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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492643 to 493643
13975
mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857
13976
mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581
13977
mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396
13978
mRNA_5611: 13979 - HMMPfam-Protein of unknown function (DUF2433)-PF10360, at 507663 to 510497
13979
Group
Condition
mRNA_5607
mRNA_5608
mRNA_5609
mRNA_5610
mRNA_5611
13975
13976
13977
13978
13979
auxotrophy
YNB Glucose 75mM Methionine
-1.2
0.5
-0.2
0.1
-0.3
auxotrophy
YNB Glucose
-0.8
0.3
-0.3
-0.2
0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.3
0.0
0.0
0.2
0.3
ypd buoyancy
40 hrs High Buoyancy
-1.1
-0.2
-0.1
0.0
0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
-0.2
0.3
0.1
0.8
ypd buoyancy
40 hrs Low Buoyancy
0.1
-0.8
0.0
-0.2
0.4
auxotrophy
Dropout Complete
-0.5
0.3
-0.2
0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
0.2
0.1
0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.4
-0.0
-0.2
0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
0.8
0.2
0.2
-0.3
growth on oleic acid
YNB Glucose
-0.9
0.6
0.1
0.1
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
0.7
0.0
0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-2.1
1.1
0.4
0.2
0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
-0.1
0.2
0.1
1.5
growth on oleic acid
YNB Oleic Acid
-0.1
0.6
0.2
0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.3
0.1
0.2
0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
0.3
0.3
0.2
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
0.8
0.4
0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
0.6
0.1
-0.1
0.3
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.3
0.5
0.0
0.3
growth on ypd
YPD
-0.1
0.4
0.3
-0.0
1.5
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