Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5606: 13974 - HMMPfam-Glycosyl hydrolase family 61-PF03443, at 490691 to 492139 13974 mRNA_5607: 13975 - HMMPfam-rRNA processing-PF08524, at 492643 to 493643 13975 mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978
Group Condition mRNA_5606 mRNA_5607 mRNA_5608 mRNA_5609 mRNA_5610
13974
13975
13976
13977
13978
ypd buoyancy 40 hrs High Buoyancy -0.3 -1.1 -0.2 -0.1 0.0
ypd buoyancy 40 hrs Low Buoyancy -0.1 0.1 -0.8 0.0 -0.2
auxotrophy YNB Glucose 75mM Arginine 0.3 -1.3 0.0 0.0 0.2
auxotrophy YNB Glucose 0.1 -0.8 0.3 -0.3 -0.2
auxotrophy YNB Glucose 75mM Methionine 0.2 -1.2 0.5 -0.2 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.9 -1.6 -0.2 0.3 0.1
facs on lipid accumulation Sorted High BODIPY Gate 0.9 -1.5 -0.1 0.2 0.1
ypd buoyancy 40 hrs Median Buoyancy 0.2 0.2 -0.4 -0.0 -0.2
auxotrophy Dropout Complete 0.1 -0.5 0.3 -0.2 0.1
facs on lipid accumulation Sorted No BODIPY Gate 0.5 -2.1 1.1 0.4 0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.2 -0.1 -0.3 0.1 0.2
growth on ricinoleic acid YNB Glucose 0.1 -0.4 0.2 0.1 0.2
growth on oleic acid YNB Glucose 0.3 -0.9 0.6 0.1 0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 -0.3 0.7 0.0 0.1
growth on oleic acid YNB Oleic Acid -0.5 -0.1 0.6 0.2 0.2
growth on ricinoleic acid YNB Ricinoleic Acid 0.1 -0.3 0.3 0.3 0.2
growth on ypd YPD 0.2 -0.1 0.4 0.3 -0.0
facs on lipid accumulation Sorted Low BODIPY Gate 0.7 -0.9 0.8 0.2 0.2
ypd buoyancy 40 hrs No Buoyancy Separation 0.4 0.6 0.1 -0.1 0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 -0.3 0.8 0.4 0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.7 0.1 0.3 0.5 0.0
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