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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452647 to 453380
13957
mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453497 to 457057
13958
mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458129 to 461343
13959
mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461599 to 463064
13960
mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888
13961
Group
Condition
mRNA_5589
mRNA_5590
mRNA_5591
mRNA_5592
mRNA_5593
13957
13958
13959
13960
13961
growth on ricinoleic acid
YNB Glucose
-0.2
0.1
-0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
0.1
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.0
0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
0.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.1
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
0.1
0.0
-0.1
growth on oleic acid
YNB Glucose
0.5
0.1
-0.7
0.1
auxotrophy
YNB Glucose
0.5
0.0
-0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
0.3
0.3
-0.5
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.2
0.2
0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.1
0.4
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.1
0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.6
0.2
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
0.9
-0.0
-0.4
0.0
ypd buoyancy
40 hrs High Buoyancy
0.5
-0.1
-0.0
0.2
auxotrophy
Dropout Complete
0.7
0.0
0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.1
0.1
0.2
0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
0.2
0.2
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
1.0
0.4
-0.2
-0.3
growth on ypd
YPD
0.1
0.2
0.5
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.1
0.7
0.1
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