Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5589: 13957 - HMMPfam-Region in Clathrin and VPS-PF00637,ProSiteProfiles-Clathrin heavy-chain (CHCR) repeat profile.-PS50236,SMART-Clathrin heavy chain repeat homology-SM00299,SUPERFAMILY--SSF48371, at 452647 to 453380 13957 mRNA_5590: 13958 - K11137 TELO2, TEL2 telomere length regulation protein, at 453497 to 457057 13958 mRNA_5591: 13959 - K11182 AOC1, ABP1 diamine oxidase, at 458129 to 461343 13959 mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461599 to 463064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961
Group Condition mRNA_5589 mRNA_5590 mRNA_5591 mRNA_5592 mRNA_5593
13957
13958
13959
13960
13961
growth on ricinoleic acid YNB Glucose -0.2   0.1 -0.8 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3   0.1 -0.4 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.8   -0.0 0.4 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5   -0.4 0.6 -0.0
ypd buoyancy 40 hrs Median Buoyancy 0.2   -0.1 -0.4 -0.0
growth on oleic acid YNB Oleic Acid -0.3   0.1 0.0 -0.1
growth on oleic acid YNB Glucose 0.5   0.1 -0.7 0.1
auxotrophy YNB Glucose 0.5   0.0 -0.5 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid 0.3   0.3 -0.5 0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1   -0.2 0.2 0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.3   0.1 0.4 0.1
ypd buoyancy 40 hrs Low Buoyancy 0.2   0.1 0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine 0.6   0.2 -0.3 -0.0
auxotrophy YNB Glucose 75mM Methionine 0.9   -0.0 -0.4 0.0
ypd buoyancy 40 hrs High Buoyancy 0.5   -0.1 -0.0 0.2
auxotrophy Dropout Complete 0.7   0.0 0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1   0.1 0.2 0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.4   0.2 0.2 0.1
ypd buoyancy 40 hrs No Buoyancy Separation 1.0   0.4 -0.2 -0.3
growth on ypd YPD 0.1   0.2 0.5 0.2
facs on lipid accumulation Sorted No BODIPY Gate 0.1   0.1 0.7 0.1
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