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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5508: 13876 - KOG0297 TNF receptor-associated factor, at 262441 to 263588
13876
mRNA_5509: 13877 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 264045 to 264907
13877
mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265643 to 266758
13878
mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267375 to 268513
13879
mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268970 to 271571
13880
Group
Condition
mRNA_5508
mRNA_5509
mRNA_5510
mRNA_5511
mRNA_5512
13876
13877
13878
13879
13880
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
-1.1
0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.4
-0.9
-0.0
0.0
auxotrophy
Dropout Complete
0.1
-0.4
0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
0.8
-0.4
-0.1
auxotrophy
YNB Glucose
0.4
-0.2
0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.0
0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
0.4
-0.2
-0.0
0.2
growth on ypd
YPD
0.2
-0.6
0.5
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.0
0.9
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
0.3
-0.2
0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
0.0
0.8
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
0.8
0.2
-0.5
growth on oleic acid
YNB Glucose
0.4
-0.1
0.6
-0.3
ypd buoyancy
40 hrs High Buoyancy
0.1
1.2
-0.5
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
0.9
0.5
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
0.4
-0.2
1.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
1.0
0.5
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.2
1.2
0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
0.3
1.3
-0.1
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.5
0.6
0.9
-0.2
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