Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167116 to 168617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168838 to 170246 13838 mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170763 to 172785 13839 mRNA_5472: 13840 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 173167 to 176789 13840 mRNA_5473: 13841 - KOG2226 Proteins containing regions of low-complexity, at 176927 to 180681 13841
Group Condition mRNA_5469 mRNA_5470 mRNA_5471 mRNA_5472 mRNA_5473
13837
13838
13839
13840
13841
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.2 0.1   -0.3
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.5 -0.1   0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.1 0.3   -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 0.1 -0.2   -0.2
growth on ricinoleic acid YNB Glucose -0.4 -0.1 -0.0   -0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.0 -0.5   0.3
growth on oleic acid YNB Oleic Acid 0.1 -0.2 -0.0   -0.4
ypd buoyancy 40 hrs No Buoyancy Separation 0.3 0.3 0.0   -1.0
auxotrophy Dropout Complete 0.1 -0.4 -0.3   0.2
auxotrophy YNB Glucose -0.5 -0.0 -0.1   0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.1 0.3 -0.0   -0.6
growth on oleic acid YNB Glucose -0.3 0.4 -0.1   -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 0.1 0.1   0.3
ypd buoyancy 40 hrs Median Buoyancy 0.2 0.2 -0.3   -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 0.3 0.3   -0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.3 0.2 0.1   0.1
ypd buoyancy 40 hrs High Buoyancy 0.2 0.2 -0.3   0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.6 0.4 0.2   0.2
ypd buoyancy 40 hrs Low Buoyancy 0.4 0.0 -0.2   0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 0.5 0.1   -0.0
growth on ypd YPD -0.3 0.3 0.2   0.4
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