Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831 mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155001 to 155781 13832 mRNA_5465: 13833 - Hypothetical Protein, at 156189 to 157604 13833 mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157808 to 163476 13834
Group Condition mRNA_5462 mRNA_5463 mRNA_5464 mRNA_5465 mRNA_5466
13830
13831
13832
13833
13834
facs on lipid accumulation Sorted High BODIPY Gate -0.3 0.0   -0.5 -0.2
auxotrophy YNB Glucose 75mM Arginine 0.0 -0.3   -0.3 0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.1   -0.1 -0.0
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.3   -0.3 0.2
auxotrophy Dropout Complete -0.0 -0.1   0.0 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid 0.1 -0.2   0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.0 0.3   0.5 -0.9
auxotrophy YNB Glucose 0.3 -0.3   0.1 -0.0
growth on ricinoleic acid YNB Glucose 0.3 -0.2   0.1 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid 0.2 -0.4   0.1 0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.1 0.1   0.6 -0.5
growth on ypd YPD 0.1 0.0   -0.0 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 0.2   0.4 0.1
growth on oleic acid YNB Glucose 0.1 -0.0   0.5 0.0
ypd buoyancy 40 hrs Low Buoyancy 0.2 0.1   0.5 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 0.2   -0.0 0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1 0.4   0.6 -0.4
growth on oleic acid YNB Oleic Acid 0.1 0.0   0.9 -0.0
ypd buoyancy 40 hrs High Buoyancy 0.1 0.1   0.8 0.0
ypd buoyancy 40 hrs Median Buoyancy 0.1 0.1   0.8 0.0
ypd buoyancy 40 hrs No Buoyancy Separation 0.6 -0.1   1.4 0.2
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