Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5459: 13827 - K11274 WDHD1, CTF4 chromosome transmission fidelity protein 4, at 137712 to 142307 13827 mRNA_5460: 13828 - Hypothetical Protein, at 142761 to 144304 13828 mRNA_5461: 13829 - KOG1721 FOG Zn-finger, at 144867 to 148106 13829 mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831
Group Condition mRNA_5459 mRNA_5460 mRNA_5461 mRNA_5462 mRNA_5463
13827
13828
13829
13830
13831
facs on lipid accumulation Sorted Low BODIPY Gate -1.0 -0.4 -0.0 -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -1.3 -0.2 0.0 0.1 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid -1.3 0.1 0.0 0.2 -0.4
growth on ricinoleic acid YNB Glucose -0.3 -1.0 0.2 0.3 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.7 -0.2 -0.0 -0.0 0.3
growth on oleic acid YNB Oleic Acid -0.3 -0.4 -0.0 0.1 0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.4 0.1 -0.0 -0.3 0.0
growth on oleic acid YNB Glucose -0.6 0.2 0.0 0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 0.0 -0.1 0.0 0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.4 0.2 -0.1 -0.1 0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.2 -0.1 0.1 0.4
auxotrophy Dropout Complete -0.8 0.6 0.1 -0.0 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 0.1 -0.0 -0.2 0.2
ypd buoyancy 40 hrs Median Buoyancy 0.2 0.1 -0.1 0.1 0.1
ypd buoyancy 40 hrs High Buoyancy 0.1 0.2 0.1 0.1 0.1
growth on ypd YPD 0.6 -0.0 -0.0 0.1 0.0
auxotrophy YNB Glucose -0.2 0.8 0.2 0.3 -0.3
auxotrophy YNB Glucose 75mM Methionine -0.2 1.0 0.2 0.1 -0.3
ypd buoyancy 40 hrs Low Buoyancy 0.4 0.1 0.1 0.2 0.1
auxotrophy YNB Glucose 75mM Arginine 0.2 0.9 0.2 0.0 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation 1.7 -0.2 -0.1 0.6 -0.1
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