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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116614 to 117202
13816
mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117409 to 118509
13817
mRNA_5450: 13818 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 118824 to 121253
13818
mRNA_5451: 13819 - Hypothetical Protein, at 122441 to 123785
13819
mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124272 to 125754
13820
Group
Condition
mRNA_5448
mRNA_5449
mRNA_5450
mRNA_5451
mRNA_5452
13816
13817
13818
13819
13820
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-0.4
0.0
0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
-0.1
-0.1
0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.2
-0.2
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.1
0.1
0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
0.4
0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
0.1
-0.2
-0.2
0.3
growth on ypd
YPD
-0.1
-0.2
0.1
0.0
0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
0.2
-0.1
0.1
0.2
auxotrophy
Dropout Complete
0.0
-0.0
-0.2
-0.1
0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
0.1
-0.1
0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.3
-0.2
0.1
0.0
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.0
-0.1
-0.0
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
0.2
-0.2
0.1
0.2
growth on oleic acid
YNB Oleic Acid
-0.0
0.3
-0.2
-0.1
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
0.3
0.0
0.1
0.1
growth on oleic acid
YNB Glucose
-0.0
0.3
0.0
-0.0
0.2
auxotrophy
YNB Glucose
0.0
-0.0
-0.1
0.0
0.5
growth on ricinoleic acid
YNB Glucose
0.1
0.0
-0.4
0.2
0.4
ypd buoyancy
40 hrs High Buoyancy
0.0
0.2
0.1
0.1
0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
0.1
-0.2
0.1
0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
0.1
0.2
-0.0
0.0
0.7
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