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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107127 to 108436
13811
mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108625 to 109612
13812
mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110701 to 112520
13813
mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113170 to 113689
13814
mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113720 to 116134
13815
Group
Condition
mRNA_5443
mRNA_5444
mRNA_5445
mRNA_5446
mRNA_5447
13811
13812
13813
13814
13815
growth on oleic acid
YNB Oleic Acid
0.2
0.2
-2.5
0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
0.6
-1.7
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
0.4
-1.6
-0.1
auxotrophy
Dropout Complete
-0.1
0.1
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.1
-0.1
auxotrophy
YNB Glucose
0.0
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
0.2
0.1
-0.4
-0.2
growth on ypd
YPD
-0.2
-0.1
0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
0.3
-0.3
0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
0.1
0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.4
-0.2
0.8
ypd buoyancy
40 hrs No Buoyancy Separation
0.4
0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.0
-0.1
0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
0.4
-0.1
0.1
auxotrophy
YNB Glucose 75mM Methionine
0.3
0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
0.5
-0.2
0.1
growth on oleic acid
YNB Glucose
0.1
0.3
-0.3
0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
-0.2
0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.3
-0.0
0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
0.0
0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.6
0.1
0.0
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