Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5411: 13779 - K03251 EIF3D translation initiation factor 3 subunit D, at 39180 to 41133 13779 mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41309 to 43272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782 mRNA_5415: 13783 - HMMPfam-Tyrosyl-DNA phosphodiesterase-PF06087,SUPERFAMILY--SSF56024, at 48943 to 50652 13783
Group Condition mRNA_5411 mRNA_5412 mRNA_5413 mRNA_5414 mRNA_5415
13779
13780
13781
13782
13783
facs on lipid accumulation Sorted No BODIPY Gate   -0.1 -0.2 -0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate   0.1 -0.2 -0.4 0.0
growth on oleic acid YNB Oleic Acid   -0.2 0.1 -0.5 0.2
growth on ypd YPD   0.1 0.1 -0.0 -0.5
facs on lipid accumulation Sorted High BODIPY Gate   -0.2 -0.1 0.2 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy   0.0 0.2 0.1 -0.5
auxotrophy YNB Glucose 75mM Arginine   0.0 0.1 -0.3 0.1
auxotrophy Dropout Complete   -0.2 0.0 -0.0 0.1
auxotrophy YNB Glucose   -0.0 0.1 -0.1 0.1
ypd buoyancy 40 hrs Low Buoyancy   0.1 -0.1 -0.0 0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy   -0.2 0.2 0.1 -0.1
growth on oleic acid YNB Glucose   -0.1 0.2 -0.3 0.3
growth on ricinoleic acid YNB Methylricinoleic Acid   0.1 -0.1 0.0 0.1
growth on ricinoleic acid YNB Ricinoleic Acid   -0.2 0.2 0.1 0.0
ypd buoyancy 40 hrs Median Buoyancy   0.2 -0.0 -0.1 0.1
ypd buoyancy 40 hrs High Buoyancy   0.1 0.1 -0.2 0.1
growth on ricinoleic acid YNB Glucose   -0.0 0.0 0.0 0.2
auxotrophy YNB Glucose 75mM Methionine   -0.1 0.2 -0.2 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation   0.1 0.2 -0.1 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy   0.1 0.1 -0.1 0.2
ypd buoyancy 40 hrs No Buoyancy Separation   0.3 0.2 0.3 -0.1
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