Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493002 to 494592 13708 mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709
Group Condition mRNA_5337 mRNA_5338 mRNA_5339 mRNA_5340 mRNA_5341
13705
13706
13707
13708
13709
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 -1.1   -0.2 0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -1.7   0.2 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -1.6   0.1 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.6   -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.3 -0.8   0.1 -0.0
growth on ypd YPD -0.3 -0.0   -0.5 -0.0
auxotrophy YNB Glucose -0.1 -0.4   -0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.2   0.3 -0.4
growth on ricinoleic acid YNB Glucose -0.1 -0.5   0.2 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.2   -0.0 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 0.3   0.2 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.1   0.3 -0.4
growth on oleic acid YNB Glucose 0.1 -0.4   0.0 0.0
growth on oleic acid YNB Oleic Acid -0.0 -0.3   -0.0 0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.1   0.3 -0.1
auxotrophy Dropout Complete 0.1 -0.1   -0.1 0.0
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1   0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 0.1   0.3 -0.5
facs on lipid accumulation Sorted High BODIPY Gate 0.3 -0.1   0.2 -0.2
ypd buoyancy 40 hrs High Buoyancy 0.2 0.2   0.1 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 0.1   0.2 0.1
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