Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481630 to 482657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705 mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424 13706 mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707
Group Condition mRNA_5335 mRNA_5336 mRNA_5337 mRNA_5338 mRNA_5339
13703
13704
13705
13706
13707
growth on ricinoleic acid YNB Ricinoleic Acid -0.0   -0.2 -1.7  
growth on ricinoleic acid YNB Methylricinoleic Acid 0.2   -0.1 -1.6  
facs on lipid accumulation Sorted Low BODIPY Gate 0.2   -0.6 -1.1  
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.9   -0.1 -0.1  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.6   -0.2 -0.1  
growth on ricinoleic acid YNB Glucose -0.2   -0.1 -0.5  
facs on lipid accumulation Sorted No BODIPY Gate 0.4   -0.3 -0.8  
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1   -0.2 -0.2  
ypd buoyancy 40 hrs Median Buoyancy -0.5   -0.1 0.1  
growth on ypd YPD -0.1   -0.3 -0.0  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5   -0.0 0.1  
auxotrophy YNB Glucose 75mM Methionine 0.6   -0.2 -0.6  
ypd buoyancy 40 hrs High Buoyancy -0.5   0.2 0.2  
ypd buoyancy 40 hrs Low Buoyancy 0.1   -0.1 -0.1  
auxotrophy YNB Glucose 75mM Arginine 0.2   -0.0 -0.2  
growth on oleic acid YNB Glucose 0.5   0.1 -0.4  
growth on oleic acid YNB Oleic Acid 0.5   -0.0 -0.3  
facs on lipid accumulation Sorted High BODIPY Gate 0.2   0.3 -0.1  
ypd buoyancy 40 hrs No Buoyancy Separation 0.5   -0.1 0.3  
auxotrophy YNB Glucose 1.1   -0.1 -0.4  
auxotrophy Dropout Complete 1.0   0.1 -0.1  
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