Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
500 nt
mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479497 to 481330
13702
mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481630 to 482657
13703
mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688
13704
mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998
13705
mRNA_5338: 13706 - K00891 E2.7.1.71, aroK, aroL shikimate kinase, at 488482 to 491424
13706
Group
Condition
mRNA_5334
mRNA_5335
mRNA_5336
mRNA_5337
mRNA_5338
13702
13703
13704
13705
13706
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.0
-0.2
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
0.2
-0.1
-1.6
ypd buoyancy
40 hrs Median Buoyancy
-1.2
-0.5
-0.1
0.1
ypd buoyancy
40 hrs High Buoyancy
-1.1
-0.5
0.2
0.2
growth on oleic acid
YNB Oleic Acid
-1.2
0.5
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.6
0.2
-0.6
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
0.6
-0.2
-0.6
growth on ricinoleic acid
YNB Glucose
0.2
-0.2
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
0.4
0.4
-0.3
-0.8
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.2
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
0.2
0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
0.5
-0.1
0.3
growth on oleic acid
YNB Glucose
0.2
0.5
0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
1.7
-0.9
-0.1
-0.1
auxotrophy
YNB Glucose
-0.0
1.1
-0.1
-0.4
auxotrophy
Dropout Complete
-0.2
1.0
0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
1.7
-0.6
-0.2
-0.1
growth on ypd
YPD
1.5
-0.1
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
2.1
-0.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
2.0
-0.5
-0.0
0.1
remove
mRNA_5334
plot
remove
mRNA_5335
plot
remove
mRNA_5336
remove
mRNA_5337
plot
remove
mRNA_5338
plot