Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478191 to 479250 13701 mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479497 to 481330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481630 to 482657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688 13704 mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998 13705
Group Condition mRNA_5333 mRNA_5334 mRNA_5335 mRNA_5336 mRNA_5337
13701
13702
13703
13704
13705
ypd buoyancy 40 hrs Median Buoyancy -0.1 -1.2 -0.5   -0.1
ypd buoyancy 40 hrs High Buoyancy -0.3 -1.1 -0.5   0.2
growth on oleic acid YNB Oleic Acid -0.2 -1.2 0.5   -0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 -0.4 -0.0   -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.5 0.1   -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 -0.5 0.2   -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 0.6 0.2   -0.6
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.4 0.5   -0.1
growth on ricinoleic acid YNB Glucose -0.0 0.2 -0.2   -0.1
auxotrophy YNB Glucose 75mM Arginine 0.1 0.1 0.2   -0.0
facs on lipid accumulation Sorted High BODIPY Gate 0.3 -0.3 0.2   0.3
auxotrophy YNB Glucose 75mM Methionine 0.5 -0.3 0.6   -0.2
facs on lipid accumulation Sorted No BODIPY Gate 0.2 0.4 0.4   -0.3
growth on oleic acid YNB Glucose -0.1 0.2 0.5   0.1
auxotrophy Dropout Complete -0.1 -0.2 1.0   0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 1.7 -0.6   -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.3 1.7 -0.9   -0.1
growth on ypd YPD -0.1 1.5 -0.1   -0.3
auxotrophy YNB Glucose 0.3 -0.0 1.1   -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0 2.0 -0.5   -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.0 2.1 -0.1   -0.2
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