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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478191 to 479250
13701
mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479497 to 481330
13702
mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481630 to 482657
13703
mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482937 to 484688
13704
mRNA_5337: 13705 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 484904 to 487998
13705
Group
Condition
mRNA_5333
mRNA_5334
mRNA_5335
mRNA_5336
mRNA_5337
13701
13702
13703
13704
13705
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-1.2
-0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-1.1
-0.5
0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-1.2
0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
0.6
0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.4
0.5
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.1
0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
-0.3
0.2
0.3
auxotrophy
YNB Glucose 75mM Methionine
0.5
-0.3
0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.2
0.4
0.4
-0.3
growth on oleic acid
YNB Glucose
-0.1
0.2
0.5
0.1
auxotrophy
Dropout Complete
-0.1
-0.2
1.0
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
1.7
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.3
1.7
-0.9
-0.1
growth on ypd
YPD
-0.1
1.5
-0.1
-0.3
auxotrophy
YNB Glucose
0.3
-0.0
1.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
2.0
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.0
2.1
-0.1
-0.2
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