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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256939 to 258074
13615
mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258879 to 260199
13616
mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260649 to 264628
13617
mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267361 to 271776
13618
mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271974 to 275743
13619
Group
Condition
mRNA_5247
mRNA_5248
mRNA_5249
mRNA_5250
mRNA_5251
13615
13616
13617
13618
13619
auxotrophy
YNB Glucose
-0.5
-0.3
0.1
-1.5
auxotrophy
Dropout Complete
-0.4
-0.2
0.1
-1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
0.1
-1.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
-0.1
-0.9
growth on ypd
YPD
0.3
-0.2
0.0
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
0.3
-0.0
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
0.2
-0.3
-0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
0.3
-0.5
-0.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
0.1
0.2
-1.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
0.0
0.2
0.2
-1.1
growth on ricinoleic acid
YNB Glucose
-0.0
0.2
0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
0.5
-0.3
-0.3
0.1
ypd buoyancy
40 hrs Median Buoyancy
0.2
-0.4
0.2
-0.1
growth on oleic acid
YNB Glucose
-0.0
0.0
-0.1
0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.0
0.2
0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
0.1
1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.1
0.1
0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-0.0
0.2
0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
0.2
1.5
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