Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255112 to 256642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256939 to 258074 13615 mRNA_5248: 13616 - KOG2084 Predicted histone tail methylase containing SET domain, at 258879 to 260199 13616 mRNA_5249: 13617 - K01535 PMA1, PMA2 H+-transporting ATPase, at 260649 to 264628 13617 mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267361 to 271776 13618
Group Condition mRNA_5246 mRNA_5247 mRNA_5248 mRNA_5249 mRNA_5250
13614
13615
13616
13617
13618
facs on lipid accumulation Sorted High BODIPY Gate -1.3 0.2 -0.3   -0.1
auxotrophy YNB Glucose 0.1 -0.5 -0.3   0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.4 -0.1   0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.5 -0.1   0.1
growth on oleic acid YNB Oleic Acid -0.1 -0.1 -0.2   -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.2 -0.1   0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.4 -0.2 0.1   0.2
growth on ricinoleic acid YNB Glucose -0.6 -0.0 0.2   0.0
growth on oleic acid YNB Glucose -0.2 -0.0 0.0   -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 -0.0 0.3   -0.0
auxotrophy Dropout Complete 0.3 -0.4 -0.2   0.1
auxotrophy YNB Glucose 75mM Arginine 0.0 -0.2 -0.0   0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 0.2 -0.4   0.2
ypd buoyancy 40 hrs No Buoyancy Separation 0.1 0.5 -0.3   -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 0.0 0.2   0.1
ypd buoyancy 40 hrs High Buoyancy 0.5 -0.0 -0.3   -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.3 -0.2 -0.1   0.1
growth on ypd YPD 0.2 0.3 -0.2   0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.0 0.1 -0.0   0.2
ypd buoyancy 40 hrs Low Buoyancy 0.7 0.3 -0.5   -0.1
facs on lipid accumulation Sorted Low BODIPY Gate 1.5 0.0 0.2   0.2
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