Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612 mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253942 to 254889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255112 to 256642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256939 to 258074 13615
Group Condition mRNA_5243 mRNA_5244 mRNA_5245 mRNA_5246 mRNA_5247
13611
13612
13613
13614
13615
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.4 -0.9   -0.2 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.3   -0.3 0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.1   -0.4 -0.0
growth on oleic acid YNB Glucose -0.4 -0.2   -0.2 -0.0
facs on lipid accumulation Sorted High BODIPY Gate 0.7 -0.3   -1.3 0.2
growth on ricinoleic acid YNB Glucose -0.1 -0.1   -0.6 -0.0
facs on lipid accumulation Sorted No BODIPY Gate 0.1 -0.1   -0.4 -0.2
growth on oleic acid YNB Oleic Acid -0.3 -0.1   -0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine 0.1 -0.1   -0.1 -0.5
auxotrophy YNB Glucose 0.1 0.0   0.1 -0.5
auxotrophy YNB Glucose 75mM Arginine 0.0 -0.1   0.0 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.4 -0.1   -0.4 -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.2   -0.1 0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.1   0.3 -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.0 -0.3   0.0 0.1
ypd buoyancy 40 hrs High Buoyancy -0.3 -0.3   0.5 -0.0
auxotrophy Dropout Complete 0.1 -0.0   0.3 -0.4
growth on ypd YPD -0.0 -0.3   0.2 0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.8 -0.3   1.5 0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.1   0.7 0.3
ypd buoyancy 40 hrs No Buoyancy Separation 0.7 -0.3   0.1 0.5
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