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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1800635 to 1803494
13486
mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1804045 to 1805977
13487
mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1806857 to 1808752
13488
mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1809104 to 1811514
13489
mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1811957 to 1814516
13490
Group
Condition
mRNA_5118
mRNA_5119
mRNA_5120
mRNA_5121
mRNA_5122
13486
13487
13488
13489
13490
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
-0.0
0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
-0.4
0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
0.7
-1.0
-0.1
0.2
ypd buoyancy
40 hrs High Buoyancy
-0.3
0.0
0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
0.0
-0.2
0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.1
0.0
-0.4
0.4
growth on ypd
YPD
-0.1
0.0
0.2
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-0.2
0.6
0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
0.2
0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
0.5
0.4
auxotrophy
Dropout Complete
-0.1
0.6
-0.3
0.0
growth on oleic acid
YNB Glucose
0.1
-0.1
0.2
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
0.1
-0.1
0.4
facs on lipid accumulation
Sorted High BODIPY Gate
0.5
-0.4
0.1
0.4
auxotrophy
YNB Glucose
0.2
0.3
-0.2
0.4
auxotrophy
YNB Glucose 75mM Arginine
0.1
0.5
-0.1
0.2
auxotrophy
YNB Glucose 75mM Methionine
0.2
0.7
-0.2
0.1
growth on oleic acid
YNB Oleic Acid
-0.1
0.5
0.4
0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.0
0.3
0.5
0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.2
0.3
0.6
0.2
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