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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1610939 to 1612058
13405
mRNA_5038: 13406 - Hypothetical Protein, at 1613042 to 1613500
13406
mRNA_5039: 13407 - Hypothetical Protein, at 1614263 to 1614994
13407
mRNA_5040: 13408 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 1615086 to 1617129
13408
mRNA_5041: 13409 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 1617376 to 1619999
13409
Group
Condition
mRNA_5037
mRNA_5038
mRNA_5039
mRNA_5040
mRNA_5041
13405
13406
13407
13408
13409
growth on ricinoleic acid
YNB Methylricinoleic Acid
0.2
-2.3
-0.1
0.1
0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.0
-1.0
-1.0
0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.7
-0.3
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-1.2
-0.3
0.1
0.1
ypd buoyancy
40 hrs High Buoyancy
0.2
-1.5
-0.3
0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.0
-0.4
-0.0
0.2
auxotrophy
Dropout Complete
-0.3
-0.7
-0.2
0.1
0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
0.2
-1.0
-0.1
0.2
0.1
growth on oleic acid
YNB Glucose
0.2
-0.7
-0.3
0.2
-0.1
auxotrophy
YNB Glucose
-0.5
-0.1
-0.5
0.2
0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
-1.0
0.4
0.3
0.2
ypd buoyancy
40 hrs Median Buoyancy
0.3
-0.0
0.0
-0.1
0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.5
0.4
0.3
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
-0.7
0.5
0.2
0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.7
0.7
0.4
0.1
growth on oleic acid
YNB Oleic Acid
0.3
0.4
-0.3
-0.0
0.1
ypd buoyancy
40 hrs Low Buoyancy
0.2
0.2
0.2
-0.1
0.1
growth on ypd
YPD
0.1
-0.1
0.2
0.4
0.3
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
0.0
0.3
0.9
0.3
facs on lipid accumulation
Sorted No BODIPY Gate
0.6
0.2
0.1
0.7
0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
0.3
0.6
0.6
0.7
0.4
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