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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1592734 to 1594516
13398
mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1595047 to 1597304
13399
mRNA_5032: 13400 - Hypothetical Protein, at 1597807 to 1600574
13400
mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1601468 to 1605781
13401
mRNA_5034: 13402 - KOG4589 Cell division protein FtsJ, at 1606739 to 1607440
13402
Group
Condition
mRNA_5030
mRNA_5031
mRNA_5032
mRNA_5033
mRNA_5034
13398
13399
13400
13401
13402
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
-0.3
-0.1
0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.2
0.2
-0.5
0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.7
0.4
-0.3
growth on oleic acid
YNB Oleic Acid
-0.7
-0.1
-0.1
0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.5
0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
0.2
-0.0
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
0.2
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
0.3
-0.2
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.4
0.0
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
0.0
0.3
-0.1
-0.1
auxotrophy
YNB Glucose
-0.4
0.0
-0.0
0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
0.2
0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
0.3
-0.1
0.1
-0.0
auxotrophy
Dropout Complete
0.0
0.1
-0.0
0.2
facs on lipid accumulation
Sorted No BODIPY Gate
0.2
0.1
0.2
-0.2
growth on ypd
YPD
-0.0
-0.2
0.1
0.6
ypd buoyancy
40 hrs High Buoyancy
0.1
-0.1
0.4
0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
0.7
0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
0.3
0.4
0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
0.8
-0.3
0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.6
0.3
0.0
0.1
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