Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1365348 to 1366647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1367349 to 1367987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1368414 to 1369977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1370208 to 1371359 13310 mRNA_4943: 13311 - K13095 SF1 splicing factor 1, at 1372018 to 1374079 13311
Group Condition mRNA_4939 mRNA_4940 mRNA_4941 mRNA_4942 mRNA_4943
13307
13308
13309
13310
13311
ypd buoyancy 40 hrs No Buoyancy Separation 0.3 -0.4 -0.6 -0.6  
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.3 -0.4 0.3  
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.3 -0.1 -0.2  
growth on ricinoleic acid YNB Glucose -0.3 -0.3 0.2 -0.3  
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.6 0.2 0.2  
growth on ypd YPD -0.6 0.3 0.2 -0.1  
ypd buoyancy 40 hrs Low Buoyancy 0.4 0.0 -0.2 -0.3  
ypd buoyancy 40 hrs High Buoyancy 0.3 0.3 -0.4 -0.3  
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 0.2 -0.4 0.3  
facs on lipid accumulation Sorted No BODIPY Gate -0.0 0.3 -0.4 0.2  
growth on oleic acid YNB Glucose -0.3 -0.3 0.2 0.5  
growth on ricinoleic acid YNB Ricinoleic Acid 0.2 -0.1 0.2 -0.2  
ypd buoyancy 40 hrs Median Buoyancy 0.3 0.3 -0.2 -0.2  
growth on ricinoleic acid YNB Methylricinoleic Acid 0.0 0.2 0.2 -0.1  
growth on oleic acid YNB Oleic Acid -0.1 -0.0 0.2 0.3  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1 0.0 -0.4 0.8  
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.1 0.1 0.1 0.3  
auxotrophy YNB Glucose 75mM Arginine 0.1 0.1 0.4 0.2  
auxotrophy Dropout Complete 0.2 0.5 0.2 0.1  
auxotrophy YNB Glucose 75mM Methionine -0.0 0.6 0.3 0.2  
auxotrophy YNB Glucose -0.0 0.4 0.5 0.4  
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