Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1364242 to 1365196 13306 mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1365348 to 1366647 13307 mRNA_4940: 13308 - K06693 PSMD9 26S proteasome non-ATPase regulatory subunit 9, at 1367349 to 1367987 13308 mRNA_4941: 13309 - K12608 CAF16 CCR4-NOT complex subunit CAF16, at 1368414 to 1369977 13309 mRNA_4942: 13310 - Hypothetical Protein, at 1370208 to 1371359 13310
Group Condition mRNA_4938 mRNA_4939 mRNA_4940 mRNA_4941 mRNA_4942
13306
13307
13308
13309
13310
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 0.3 -0.4 -0.6 -0.6
growth on ypd YPD -0.4 -0.6 0.3 0.2 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate 0.2 -0.3 -0.3 -0.4 0.3
growth on ricinoleic acid YNB Glucose 0.1 -0.3 -0.3 0.2 -0.3
facs on lipid accumulation Sorted High BODIPY Gate 0.3 -0.2 -0.3 -0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy 0.1 0.3 0.3 -0.4 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 0.0 0.2 0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy 0.2 0.4 0.0 -0.2 -0.3
growth on oleic acid YNB Glucose 0.2 -0.3 -0.3 0.2 0.5
ypd buoyancy 40 hrs Median Buoyancy 0.0 0.3 0.3 -0.2 -0.2
facs on lipid accumulation Sorted No BODIPY Gate 0.3 -0.0 0.3 -0.4 0.2
growth on oleic acid YNB Oleic Acid -0.0 -0.1 -0.0 0.2 0.3
auxotrophy YNB Glucose 75mM Arginine -0.3 0.1 0.1 0.4 0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.7 -0.0 -0.6 0.2 0.2
growth on ricinoleic acid YNB Ricinoleic Acid 0.4 0.2 -0.1 0.2 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.3 -0.0 0.6 0.3 0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy 1.0 -0.1 0.2 -0.4 0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.8 0.1 0.0 -0.4 0.8
auxotrophy Dropout Complete 0.3 0.2 0.5 0.2 0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.7 0.1 0.1 0.1 0.3
auxotrophy YNB Glucose 0.2 -0.0 0.4 0.5 0.4
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