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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1324848 to 1328229
13293
mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1328317 to 1334558
13294
mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1334760 to 1336928
13295
mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226
13296
mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395
13297
Group
Condition
mRNA_4925
mRNA_4926
mRNA_4927
mRNA_4928
mRNA_4929
13293
13294
13295
13296
13297
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
0.1
-0.5
-0.5
-3.9
growth on oleic acid
YNB Glucose
0.2
0.0
-0.6
-0.3
-4.4
growth on oleic acid
YNB Oleic Acid
-0.3
0.1
-0.6
-0.3
-3.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
0.1
-0.1
-0.2
-3.8
growth on ricinoleic acid
YNB Glucose
-0.5
0.1
-0.2
-0.5
-3.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
0.2
0.4
-0.5
-3.2
auxotrophy
YNB Glucose 75mM Methionine
0.5
0.1
0.2
-0.6
-4.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
1.0
0.1
-1.2
-0.1
-3.4
auxotrophy
YNB Glucose
0.4
0.2
0.4
-0.7
-3.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
0.1
0.4
-0.1
-2.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
0.6
0.2
-0.4
-2.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
1.3
-0.1
-0.5
-0.0
-3.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
1.0
-0.2
-0.9
0.4
-2.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
1.3
-0.0
-0.6
0.3
-2.6
ypd buoyancy
40 hrs No Buoyancy Separation
0.5
0.0
-0.0
0.3
-1.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
0.2
-0.1
-0.2
auxotrophy
Dropout Complete
0.6
0.1
0.4
-1.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.1
0.1
0.1
0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
0.1
0.0
0.0
growth on ypd
YPD
-0.5
0.2
0.6
-0.2
0.2
auxotrophy
YNB Glucose 75mM Arginine
0.5
0.3
0.0
-0.5
0.2
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