Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1324848 to 1328229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1328317 to 1334558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1334760 to 1336928 13295 mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395 13297
Group Condition mRNA_4925 mRNA_4926 mRNA_4927 mRNA_4928 mRNA_4929
13293
13294
13295
13296
13297
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 0.1 -0.5 -0.5 -3.9
growth on oleic acid YNB Glucose 0.2 0.0 -0.6 -0.3 -4.4
growth on oleic acid YNB Oleic Acid -0.3 0.1 -0.6 -0.3 -3.5
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 0.1 -0.1 -0.2 -3.8
growth on ricinoleic acid YNB Glucose -0.5 0.1 -0.2 -0.5 -3.1
facs on lipid accumulation Sorted No BODIPY Gate -0.9 0.2 0.4 -0.5 -3.2
auxotrophy YNB Glucose 75mM Methionine 0.5 0.1 0.2 -0.6 -4.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 1.0 0.1 -1.2 -0.1 -3.4
auxotrophy YNB Glucose 0.4 0.2 0.4 -0.7 -3.8
facs on lipid accumulation Sorted Low BODIPY Gate -1.1 0.1 0.4 -0.1 -2.4
facs on lipid accumulation Sorted High BODIPY Gate -0.5 0.6 0.2 -0.4 -2.8
buoyancy on lipid accumulation 40 hrs High Buoyancy 1.3 -0.1 -0.5 -0.0 -3.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy 1.0 -0.2 -0.9 0.4 -2.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy 1.3 -0.0 -0.6 0.3 -2.6
ypd buoyancy 40 hrs No Buoyancy Separation 0.5 0.0 -0.0 0.3 -1.4
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.3 0.2 -0.1 -0.2
auxotrophy Dropout Complete 0.6 0.1 0.4 -1.0 -0.6
ypd buoyancy 40 hrs Low Buoyancy -0.7 -0.1 0.1 0.1 0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.2 0.1 0.0 0.0
growth on ypd YPD -0.5 0.2 0.6 -0.2 0.2
auxotrophy YNB Glucose 75mM Arginine 0.5 0.3 0.0 -0.5 0.2
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