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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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all 21 experiments
500 nt
mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1263087 to 1265892
13270
mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1266011 to 1266275
13271
mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1266419 to 1270865
13272
mRNA_4905: 13273 - KOG2371 Molybdopterin biosynthesis protein, at 1271158 to 1273410
13273
mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1273469 to 1274303
13274
Group
Condition
mRNA_4902
mRNA_4903
mRNA_4904
mRNA_4905
mRNA_4906
13270
13271
13272
13273
13274
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.4
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.4
-0.1
auxotrophy
Dropout Complete
-0.0
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
0.1
-0.1
-0.4
auxotrophy
YNB Glucose
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
0.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
0.1
-0.2
growth on ypd
YPD
0.1
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
0.1
0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
0.2
-0.1
0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
0.0
0.1
0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
0.3
0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
0.0
0.5
0.2
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