Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1263087 to 1265892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1266011 to 1266275 13271 mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1266419 to 1270865 13272 mRNA_4905: 13273 - KOG2371 Molybdopterin biosynthesis protein, at 1271158 to 1273410 13273 mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1273469 to 1274303 13274
Group Condition mRNA_4902 mRNA_4903 mRNA_4904 mRNA_4905 mRNA_4906
13270
13271
13272
13273
13274
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3   -0.2 -0.7  
growth on ricinoleic acid YNB Ricinoleic Acid -0.4   -0.4 -0.3  
growth on ricinoleic acid YNB Glucose -0.1   -0.3 -0.3  
growth on oleic acid YNB Oleic Acid -0.2   -0.4 -0.1  
auxotrophy Dropout Complete -0.0   -0.3 -0.3  
facs on lipid accumulation Sorted No BODIPY Gate 0.1   -0.1 -0.4  
auxotrophy YNB Glucose -0.1   -0.2 -0.1  
auxotrophy YNB Glucose 75mM Methionine -0.1   -0.1 -0.2  
facs on lipid accumulation Sorted Low BODIPY Gate -0.3   -0.1 0.1  
growth on oleic acid YNB Glucose -0.1   -0.2 -0.1  
ypd buoyancy 40 hrs High Buoyancy -0.1   -0.0 -0.2  
facs on lipid accumulation Sorted High BODIPY Gate -0.2   0.1 -0.2  
growth on ypd YPD 0.1   -0.1 -0.2  
ypd buoyancy 40 hrs Low Buoyancy -0.2   0.1 -0.1  
ypd buoyancy 40 hrs Median Buoyancy -0.1   0.1 -0.1  
buoyancy on lipid accumulation 40 hrs Median Buoyancy 0.1   0.0 -0.2  
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation 0.1   -0.1 -0.0  
auxotrophy YNB Glucose 75mM Arginine 0.2   -0.1 0.0  
buoyancy on lipid accumulation 40 hrs High Buoyancy 0.0   0.1 0.1  
buoyancy on lipid accumulation 40 hrs Low Buoyancy 0.3   0.1 -0.1  
ypd buoyancy 40 hrs No Buoyancy Separation 0.0   0.5 0.2  
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